CN101613742A - A kind of mitten crab multielement high flux genetic marker system and genetic analysis method - Google Patents

A kind of mitten crab multielement high flux genetic marker system and genetic analysis method Download PDF

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CN101613742A
CN101613742A CN200910020751A CN200910020751A CN101613742A CN 101613742 A CN101613742 A CN 101613742A CN 200910020751 A CN200910020751 A CN 200910020751A CN 200910020751 A CN200910020751 A CN 200910020751A CN 101613742 A CN101613742 A CN 101613742A
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genetic
est
high flux
ssr
mitten crab
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CN101613742B (en
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崔朝霞
王鸿霞
吴丹华
刘媛
李倩倩
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Institute of Oceanology of CAS
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Institute of Oceanology of CAS
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Abstract

The present invention relates to aquatic products genetic breeding field, is a kind of mitten crab multielement high flux genetic marker system and genetic analysis method specifically.The multielement high flux genetic marker system is plastosome sequence information system and microsatellite molecular marker system, and wherein the microsatellite molecular marker system is made up of the system 1 of 7 EST-SSR marks and the system 2 of 6 EST-SSR marks; Method: use mitochondrial three couples of primer amplification COI, the information of the sequence of Cytb and CR is as molecule marker, same female parent separates according to genetic construction and genetic diversity with the offspring that different female parents are produced in the family with raising together with, use the EST-SSR microsatellite molecular marker again, carry out the differentiation of male parent with distinguishing maternal offspring according to genetic distance and genetic diversity, thereby finish the genealogical identification in the mitten crab genetic breeding process and confirm inbreeding coefficient.The present invention uses the sibship between the multielement high flux genetic marker system differentiation filial generation on the basis that effectively utilizes species genetic information, effectively avoid inbreeding depression simultaneously.

Description

A kind of mitten crab multielement high flux genetic marker system and genetic analysis method
Technical field
The present invention relates to aquatic products genetic breeding field, is a kind of mitten crab multielement high flux genetic marker system and genetic analysis method specifically.
Background technology
Along with development of biology, molecule marker is also being brought in constant renewal in, and the mark that is widely used at present in the marine zoogenetics analysis is plastosome sequence and microsatellite marker.Plastosome sequence (mtDNA) has characteristics such as fast, non-reorganization variation of rate of evolution and matrilinear inheritance as the extranuclear inheritance material, and identical sequence information shows that sample source is in same female parent.The mtDNA fragment that is commonly used for the inbred genetic analysis has Cytb, COI and CR.Little satellite (SSRs) is the tandem repetitive sequence that is made of 2-6 base that exists in eucaryon and prokaryotic gene group, has height polymorphism and codominance characteristics.Microsatellite marker can provide parents' genetic information, especially is applied in to disclose between individuality and the gene exchange between colony, infer in parental right relation and the hybridization analysis of phenomenon, can more fully reflect the genetic affinity between colony.The genome microsatellite marker often is used to that preciousness in imminent danger watches for animals and assessment of the genetic diversity of marine economy species and genealogical identification.Though accumulated a large amount of mitten crab sequence information (individual surplus announcing 7000 among the international shared database GenBank), but these information also also really are not applied in the analysis of required pedigree identification of genetic breeding and genetic affinity by the exploitation of system.
Summary of the invention
The object of the present invention is to provide a kind of multielement high flux genetic marker of mitten crab fast and effectively and genetic analysis method.
For achieving the above object, the technical solution used in the present invention is:
A kind of mitten crab multielement high flux genetic marker system: described multielement high flux genetic marker system is plastosome sequence information system and microsatellite molecular marker system, and wherein the microsatellite molecular marker system is made up of the system 1 of 7 EST-SSR marks and the system 2 of 6 EST-SSR marks;
System 1 is made up of 7 EST-SSR marks, and 7 pairs of primers of 7 EST-SSR marks of amplification are respectively NE5 (F:CGTGAATGCTGTAGTGTAAT; R:CACCAGAAATAATGAGGTTT);
NE12(F:ATGACATTGATGCCTGACG;R:TGCCTTTATTGACCGAGAC);
NE16(F:TTTCACATCCTCCACAGACA;R:GCCACAAGTACACCCAATCA);
NE27(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE46(F:ACTGCTGTTGTTGGTGGTC;R:CCTTAATCCGTTGCGTCA);
NE48(F:AAAGGTCAGTTAATTTCTTGAT;R:TCTAGTGAAATGACATATTGGT);
NE49(F:AGACCGCTGTTATGCTCCT;R:ATGGGAATGAAGGTTATGTATG);
System 2 is made up of 6 EST-SSR marks, and 6 pairs of primers of 6 EST-SSR marks of amplification are respectively NE1 (F:CATTCCAAGTCTTGACCCC; R:CAGAGCCACAACACTAACG);
NE18(F:TATTCAACATTTCAACAACGAT;R:GACGAGCGAAGAACTGGA);
NE23(F:AGAGGCAAATGCGATAAAGA;R:CACGACAGACTTACCAGCAC);
NE25(F:AGGAGGTGCGTAAGAGTGA;R:TTTCCTTCCATCCTGAGTC);
NE26(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE36(F:ATGTGGACTGCGGGAGA;R:GTGGTGGTAGGTTCGTCTGT)。
The genetic analysis method of mitten crab multielement high flux genetic marker system: at first, use mitochondrial three couples of primer amplification COI, the information of the sequence of Cytb and CR is as molecule marker, same female parent separates according to genetic construction and genetic diversity with the offspring that different female parents are produced in the family with raising together with, and then utilization EST-SSR microsatellite molecular marker, carry out the differentiation of male parent with distinguishing maternal offspring according to genetic distance and genetic diversity, thereby finish the genealogical identification in the mitten crab genetic breeding process and confirm inbreeding coefficient.Described amplification COI, three pairs of primers of Cytb and CR sequence be respectively LCO1490 (GGTCAACAAATCATAAAGATATTGG) and HCO2198 (TAAACTTCAGGGTGACCAAAAAATCA),
F1 (CATGCCTGAATAGTAGGAGT) and R1 (GTGCTCCAATTCAGGTCAAT), F2 (GACCGTTGAGACTACTACTATAATA) and R2 (TCCGTTGCATGTAAGTATATAGTAG).
Described EST-SSR microsatellite molecular marker is made up of system 1 and system 2;
7 pairs of primers of 7 EST-SSR marks of amplification are respectively NE5 (F:CGTGAATGCTGTAGTGTAAT; R:CACCAGAAATAATGAGGTTT);
NE12(F:ATGACATTGATGCCTGACG;R:TGCCTTTATTGACCGAGAC);
NE16(F:TTTCACATCCTCCACAGACA;R:GCCACAAGTACACCCAATCA);
NE27(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE46(F:ACTGCTGTTGTTGGTGGTC;R:CCTTAATCCGTTGCGTCA);
NE48(F:AAAGGTCAGTTAATTTCTTGAT;R:TCTAGTGAAATGACATATTGGT);
NE49(F:AGACCGCTGTTATGCTCCT;R:ATGGGAATGAAGGTTATGTATG);
System 2 is made up of 6 EST-SSR marks, and 6 pairs of primers of 6 EST-SSR marks of amplification are respectively NE1 (F:CATTCCAAGTCTTGACCCC; R:CAGAGCCACAACACTAACG);
NE18(F:TATTCAACATTTCAACAACGAT;R:GACGAGCGAAGAACTGGA);
NE23(F:AGAGGCAAATGCGATAAAGA;R:CACGACAGACTTACCAGCAC);
NE25(F:AGGAGGTGCGTAAGAGTGA;R:TTTCCTTCCATCCTGAGTC);
NE26(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE36(F:ATGTGGACTGCGGGAGA;R:GTGGTGGTAGGTTCGTCTGT)。
All primer directions are 5 '-3 ' direction.The method of described mitten crab multielement high flux genetic marker system genetic analysis can detect hundreds and thousands of samples simultaneously.
The advantage that the present invention had:
1. the genetic background of breeding is clear, has avoided the blindness of traditional breeding method.The present invention utilizes plastosome sequence and little satellite as molecule marker, resolved the genetic diversity of the mitten crab colony that China for many generations cultures, the genetic affinity between group's individuality is selected in clear and definite breeding underlying group, breeding, makes the selection of breeding material have stronger purpose.
2. the combination of plastosome sequence of the present invention and microsatellite molecular marker had both avoided only using the shortcoming that the plastosome sequence can't clear and definite paternal information, had also reduced and had only used the loaded down with trivial details of microsatellite marker, helped confirming fast that institute study the pedigree generation of individuality.
3. the present invention uses the real-time monitoring of multielement high flux genetic marker system to the breeding population genetic diversity, can effectively avoid the inbreeding depression in the genetic breeding process, ensures the science and the sustainability of breeding.
Description of drawings
Fig. 1 is genetic analysis mitten crab multielement high flux genetic marker system of the present invention (the allelotrope number of each mark of digitized representation wherein, the title of mark shown in the transverse axis, an allelic size shown in the longitudinal axis.)。
(wherein under parents' information condition of unknown, use the Simulation function of software Cervus Version2.0, the accuracy rate of distinguishing 400 familys is 100% for utilization the inventive method analog detection figure for Fig. 2 a and Fig. 2 b; By the definite maternal back of plastosome information, under the situation of parent's ten-four, the accuracy rate of distinguishing 1000 familys is 100%.)。
(its four familys, 10 individualities of each family are respectively 1-10 to Fig. 3,11-20,21-30,31-40 for utilization family of the present invention is identified figure.The utilization the art of this patent detects, and utilization software populations1.2.30 adopts the DAS method to calculate genetic distance, and UPGMA schemes to show that accuracy is 100%.)。
Embodiment
Embodiment
1) mitten crab multielement high flux genetic marker system is plastosome sequence information system and microsatellite molecular marker system, and wherein microsatellite molecular marker is to form (referring to Fig. 1) by the system 1 of 7 EST-SSR marks and the system 2 of 6 EST-SSR marks;
System 1 is made up of 7 EST-SSR marks, and 7 pairs of primers of 7 EST-SSR marks of amplification are respectively NE5 (F:CGTGAATGCTGTAGTGTAAT; R:CACCAGAAATAATGAGGTTT);
NE12(F:ATGACATTGATGCCTGACG;R:TGCCTTTATTGACCGAGAC);
NE16(F:TTTCACATCCTCCACAGACA;R:GCCACAAGTACACCCAATCA);
NE27(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE46(F:ACTGCTGTTGTTGGTGGTC;R:CCTTAATCCGTTGCGTCA);
NE48(F:AAAGGTCAGTTAATTTCTTGAT;R:TCTAGTGAAATGACATATTGGT);
NE49(F:AGACCGCTGTTATGCTCCT;R:ATGGGAATGAAGGTTATGTATG);
System 2 is made up of 6 EST-SSR marks, and 6 pairs of primers of 6 EST-SSR marks of amplification are respectively NE1 (F:CATTCCAAGTCTTGACCCC; R:CAGAGCCACAACACTAACG);
NE18(F:TATTCAACATTTCAACAACGAT;R:GACGAGCGAAGAACTGGA);
NE23(F:AGAGGCAAATGCGATAAAGA;R:CACGACAGACTTACCAGCAC);
NE25(F:AGGAGGTGCGTAAGAGTGA;R:TTTCCTTCCATCCTGAGTC);
NE26(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE36(F:ATGTGGACTGCGGGAGA;R:GTGGTGGTAGGTTCGTCTGT)。
Above primer is referring to sequence table.
2) method of mitten crab multielement high flux genetic marker system genetic analysis: at first, use mitochondrial three couples of primer amplification COI, the information of the sequence of Cytb and CR is as molecule marker, same female parent separates according to genetic construction and genetic diversity with the offspring that different female parents are produced in the family with raising together with, and then utilization EST-SSR microsatellite molecular marker, carry out the differentiation of male parent with distinguishing maternal offspring according to genetic distance and genetic diversity, thereby finish the genealogical identification in the mitten crab genetic breeding process and confirm inbreeding coefficient.
(1) the mitochondrial three couples of primer amplification COI of utilization, the information of the sequence of Cytb and CR:
A. extract the DNA of mitten crab sample;
B. the DNA with step a is a template, with primer LCO1490 (GGTCAACAAATCATAAAGATATTGG) and HCO2198 (TAAACTTCAGGGTGACCAAAAAATCA) amplification COI fragment, with primers F 1 (CATGCCTGAATAGTAGGAGT) and R1 (GTGCTCCAATTCAGGTCAAT) amplification Cytb fragment, with primers F 2 (GACCGTTGAGACTACTACTATAATA) and R2 (TCCGTTGCATGTAAGTATATAGTAG) amplification CR fragment.Above-mentioned pcr amplification product reclaims, also order-checking of purifying.The pcr amplification condition is: 95 ℃ of sex change 2 minutes, 32-35 circulation comprise that 95 ℃ of sex change 30 seconds, 54-56 ℃ annealing extended 60 seconds for 45 seconds, 72 ℃, and last 72 ℃ were extended 5 minutes.
(2) utilization EST-SSR microsatellite molecular marker
C. the DNA with step a is a template, uses primer NE5 (F:CGTGAATGCTGTAGTGTAAT respectively; R:CACCAGAAATAATGAGGTTT); NE12 (F:ATGACATTGATGCCTGACG; R:TGCCTTTATTGACCGAGAC); NE16 (F:TTTCACATCCTCCACAGACA; R:GCCACAAGTACACCCAATCA); NE27 (F:ACGGGAAATGGAACAGAT; R:TCCTTCCATCCTGAGTCC); NE46 (F:ACTGCTGTTGTTGGTGGTC; R:CCTTAATCCGTTGCGTCA); NE48 (F:AAAGGTCAGTTAATTTCTTGAT; R:TCTAGTGAAATGACATATTGGT); NE49 (F:AGACCGCTGTTATGCTCCT; R:ATGGGAATGAAGGTTATGTATG) whole microsatellite markers of amplification system 1 amount to 7.Use primer NE1 (F:CATTCCAAGTCTTGACCCC respectively; R:CAGAGCCACAACACTAACG); NE18 (F:TATTCAACATTTCAACAACGAT; R:GACGAGCGAAGAACTGGA); NE23 (F:AGAGGCAAATGCGATAAAGA; R:CACGACAGACTTACCAGCAC); NE25 (F:AGGAGGTGCGTAAGAGTGA; R:TTTCCTTCCATCCTGAGTC); NE26 (F:ACGGGAAATGGAACAGAT; R:TCCTTCCATCCTGAGTCC); NE36 (F:ATGTGGACTGCGGGAGA; R:GTGGTGGTAGGTTCGTCTGT) whole microsatellite markers of amplification system 2 amount to 6.The pcr amplification condition is: 95 ℃ of sex change 2 minutes, 28-32 circulation comprise that 95 ℃ of sex change 30 seconds, 54-58 ℃ annealing extended 60 seconds for 45 seconds, 72 ℃, and last 72 ℃ were extended 5 minutes.
Above-mentioned pcr amplification product through 8% polyacrylamide gel electrophoresis analysis, and is used CervusVersion2.0 software and carried out data processing.
Application examples 1
The model analysis function of operation Cervus obtains using patented technology of the present invention, and the number of family and the relation between the family discriminating success ratio are raised together with in differentiation, see Fig. 2.From Fig. 2 a, shown in the red line, use patent of the present invention fully,, use EST-SSR Mk system 1 and system 2 can successfully distinguish 1000 familys (accuracy rate 100%) again by the definite maternal back of plastosome information, under the situation of parent's ten-four; From Fig. 2 a shown in the black line, if do not use earlier plastosome information determine maternal, under parents' information unknown situation, use EST-SSR Mk system 1 and system 2 and only can distinguish 400 familys (accuracy rate 100%); From Fig. 2 b, shown in the red line,, use EST-SSR Mk system 1 or system 2 separately and can successfully distinguish 100 familys (accuracy rate 100%) by the definite maternal back of plastosome information, under the situation of parent's ten-four; From figure shown in the black line, if do not use earlier plastosome information determine maternal, under parents' information unknown situation, use EST-SSR Mk system 1 or system 2 separately and can successfully distinguish 10 familys (accuracy rate 100%).
Application examples 2
The sample of four familys is taken from Sheyang County, Jiangsu Province prosperous aquatic products limited liability company on October 10th, 2008, each family all is the family full-sibs one female, that a hero is produced.From each family, get 10 young crab individualities at random, number clear and definite its sibship respectively and form sample I.From another cultured population, select 4 female crabs and 4 male crabs to number the back respectively at random and form sample II as the candidate parent jointly with 4 couples of real parents.Sibship the unknown when raising together with the analysis of family between supposition sample I, the II, sample I is used the art of this patent with sample II carry out genetic analysis, be specially the plastosome information of measuring earlier all samples, clear and definite maternal information and separately with different mothers' individuality; Use the genotype that EST-SSR system 1 and system 2 detect all samples again, clear and definite male parent information, and according to 40 Id data among the sample I, go out genetic distance between the individuality with the Populations computed in software, according to genetic distance between individuality 40 individualities of four familys are gathered into four classes respectively with the method for UPGMA, the individuality of same family is all gathered into a class separately, the result of analysis and record number comparison, accuracy 100% (Fig. 3).
Sequence table .txt
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Claims (6)

1. mitten crab multielement high flux genetic marker system, it is characterized in that: described multielement high flux genetic marker system is plastosome sequence information system and microsatellite molecular marker system, and wherein the microsatellite molecular marker system is made up of the system 1 of 7 EST-SSR marks and the system 2 of 6 EST-SSR marks;
System 1 is made up of 7 EST-SSR marks, and 7 pairs of primers of 7 EST-SSR marks of amplification are respectively NE5 (F:CGTGAATGCTGTAGTGTAAT; R:CACCAGAAATAATGAGGTTT);
NE12(F:ATGACATTGATGCCTGACG;R:TGCCTTTATTGACCGAGAC);
NE16(F:TTTCACATCCTCCACAGACA;R:GCCACAAGTACACCCAATCA);
NE27(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE46(F:ACTGCTGTTGTTGGTGGTC;R:CCTTAATCCGTTGCGTCA);
NE48(F:AAAGGTCAGTTAATTTCTTGAT;R:TCTAGTGAAATGACATATTGGT);
NE49(F:AGACCGCTGTTATGCTCCT;R:ATGGGAATGAAGGTTATGTATG);
System 2 is made up of 6 EST-SSR marks, and 6 pairs of primers of 6 EST-SSR marks of amplification are respectively NE1 (F:CATTCCAAGTCTTGACCCC; R:CAGAGCCACAACACTAACG);
NE18(F:TATTCAACATTTCAACAACGAT;R:GACGAGCGAAGAACTGGA);
NE23(F:AGAGGCAAATGCGATAAAGA;R:CACGACAGACTTACCAGCAC);
NE25(F:AGGAGGTGCGTAAGAGTGA;R:TTTCCTTCCATCCTGAGTC);
NE26(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE36(F:ATGTGGACTGCGGGAGA;R:GTGGTGGTAGGTTCGTCTGT)。
2. genetic analysis method by the described mitten crab multielement high flux of claim 1 genetic marker system, it is characterized in that: at first, use mitochondrial three couples of primer amplification COI, the information of the sequence of Cytb and CR is as molecule marker, same female parent separates according to genetic construction and genetic diversity with the offspring that different female parents are produced in the family with raising together with, and then utilization EST-SSR microsatellite molecular marker, carry out the differentiation of male parent with distinguishing maternal offspring according to genetic distance and genetic diversity, thereby finish the genealogical identification in the mitten crab genetic breeding process and confirm inbreeding coefficient.
3. press the genetic analysis method of the described mitten crab multielement high flux of claim 2 genetic marker system, it is characterized in that: described amplification COI, three pairs of primers of Cytb and CR sequence be respectively LCO1490 (GGTCAACAAATCATAAAGATATTGG) and HCO2198 (TAAACTTCAGGGTGACCAAAAAATCA),
F1 (CATGCCTGAATAGTAGGAGT) and R1 (GTGCTCCAATTCAGGTCAAT), F2 (GACCGTTGAGACTACTACTATAATA) and R2 (TCCGTTGCATGTAAGTATATAGTAG).
4. by the genetic analysis method of the described mitten crab multielement high flux of claim 2 genetic marker system, it is characterized in that: described EST-SSR microsatellite molecular marker is made up of system 1 and system 2;
7 pairs of primers of 7 EST-SSR marks of amplification are respectively NE5 (F:CGTGAATGCTGTAGTGTAAT; R:CACCAGAAATAATGAGGTTT);
NE12(F:ATGACATTGATGCCTGACG;R:TGCCTTTATTGACCGAGAC);
NE16(F:TTTCACATCCTCCACAGACA;R:GCCACAAGTACACCCAATCA);
NE27(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE46(F:ACTGCTGTTGTTGGTGGTC;R:CCTTAATCCGTTGCGTCA);
NE48(F:AAAGGTCAGTTAATTTCTTGAT;R:TCTAGTGAAATGACATATTGGT);
NE49(F:AGACCGCTGTTATGCTCCT;R:ATGGGAATGAAGGTTATGTATG);
System 2 is made up of 6 EST-SSR marks, 6 pairs of primers of 6 EST-SSR marks of amplification
Be respectively NE1 (F:CATTCCAAGTCTTGACCCC; R:CAGAGCCACAACACTAACG);
NE18(F:TATTCAACATTTCAACAACGAT;R:GACGAGCGAAGAACTGGA);
NE23(F:AGAGGCAAATGCGATAAAGA;R:CACGACAGACTTACCAGCAC);
NE25(F:AGGAGGTGCGTAAGAGTGA;R:TTTCCTTCCATCCTGAGTC);
NE26(F:ACGGGAAATGGAACAGAT;R:TCCTTCCATCCTGAGTCC);
NE36(F:ATGTGGACTGCGGGAGA;R:GTGGTGGTAGGTTCGTCTGT)。
5. by the genetic analysis method of the described mitten crab multielement high flux of claim 2 genetic marker system, it is characterized in that: all primer directions are 5-3 ' direction.
6. by the genetic analysis method of the described mitten crab multielement high flux of claim 2 genetic marker system, it is characterized in that: the method for described mitten crab multielement high flux genetic marker system genetic analysis can detect hundreds and thousands of samples simultaneously.
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Cited By (6)

* Cited by examiner, † Cited by third party
Publication number Priority date Publication date Assignee Title
CN101942432A (en) * 2010-08-12 2011-01-12 中国海洋大学 Method for screening tegillarca granosa mitochondria COI gene amplification primers
CN101942433A (en) * 2010-08-12 2011-01-12 中国海洋大学 Screening method of Muricidae mitochondrion COI gene amplification primer
CN102776181A (en) * 2012-06-07 2012-11-14 中国海洋大学 Amplification primer of corbiculidae shellfish mitochondria COI (Cytochrome Oxidase I) gene
CN103667272A (en) * 2013-12-04 2014-03-26 天津市水生动物疫病预防控制中心 Eriocheir-sinensis-growth-trait-related EST (expressed sequence tag)-SSR (simple sequence repeat) molecular marker and application thereof
CN105255880A (en) * 2015-11-17 2016-01-20 万超 Sea urchin species specificity detection primer and application
CN107287313A (en) * 2017-07-07 2017-10-24 中国科学院南海海洋研究所 It is a kind of to hybridize hippocampus and its identification primer and authentication method of parent

Non-Patent Citations (2)

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Title
GOPURENKO D ET AL: "Regional patterns of genetic structure among Australian populations of the mud crab,Scylla serrata (Crustacea: Decapoda): evidence from mitochondrial DNA", 《MARINE AND FRESHWATER RESEARCH》 *
ROMAN J ET AL: "A global invader at home: population structure of the green crab, Carcinus maenas, in Europe", 《MOLECULAR ECOLOGY》 *

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CN101942432A (en) * 2010-08-12 2011-01-12 中国海洋大学 Method for screening tegillarca granosa mitochondria COI gene amplification primers
CN101942433A (en) * 2010-08-12 2011-01-12 中国海洋大学 Screening method of Muricidae mitochondrion COI gene amplification primer
CN101942433B (en) * 2010-08-12 2012-09-05 中国海洋大学 Amplification primer of muricidae mitochondrion COI gene
CN101942432B (en) * 2010-08-12 2012-11-07 中国海洋大学 Tegillarca granosa mitochondria COI gene amplification primers
CN102776181A (en) * 2012-06-07 2012-11-14 中国海洋大学 Amplification primer of corbiculidae shellfish mitochondria COI (Cytochrome Oxidase I) gene
CN102776181B (en) * 2012-06-07 2014-05-21 中国海洋大学 Amplification primer of corbiculidae shellfish mitochondria COI (Cytochrome Oxidase I) gene
CN103667272A (en) * 2013-12-04 2014-03-26 天津市水生动物疫病预防控制中心 Eriocheir-sinensis-growth-trait-related EST (expressed sequence tag)-SSR (simple sequence repeat) molecular marker and application thereof
CN103667272B (en) * 2013-12-04 2015-08-12 天津市水生动物疫病预防控制中心 The EST-SSR molecule marker relevant to mitten crab growth traits and application
CN105255880A (en) * 2015-11-17 2016-01-20 万超 Sea urchin species specificity detection primer and application
CN107287313A (en) * 2017-07-07 2017-10-24 中国科学院南海海洋研究所 It is a kind of to hybridize hippocampus and its identification primer and authentication method of parent
CN107287313B (en) * 2017-07-07 2018-11-20 中国科学院南海海洋研究所 A kind of identification primer and identification method hybridizing hippocampus and its parent

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