CA3096783C - Disinfection of bacteriophages products using supercritical carbon dioxide. - Google Patents
Disinfection of bacteriophages products using supercritical carbon dioxide. Download PDFInfo
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Abstract
Description
Disinfection of bacteriophages products using supercritical carbon dioxide.
FIELD OF THE INVENTION
[0001] The present invention relates to the general field of bacteriophages and is more particularly concerned with the disinfection of bacteriophages products using supercritical carbon dioxide and of corresponding disinfected bacteriophages products.
BACKGROUND
SUMMARY OF THE INVENTION
Date Recue/Date Received 2020-10-20
Date Recue/Date Received 2020-10-20
HO-R1-0H, RI is chosen from C2-C12 alkylene optionally interrupted by at least one oxygen, C3-C8 cycloalkylene, C3-C10 cycloalkylalkylene, Date Recue/Date Received 2020-10-20 A' 0 , and - the at least one diacid is a compound of formula:
HO-(C0)-R3-(C0)-0H, R3 is C2-C12 alkylene, - the at least one amino acid is chosen from naturally occurring amino acids and non-naturally occurring amino acid.
,R _ 0- 1-0 F131( Yo/ I31 .0)y rn - -wherein - the ratio of I:m ranges from 0.05:0.95 to 0.95:0.05, l+m=1, - R1 is chosen from C2-C12 alkylenes optionally interrupted by at least one oxygen, C3-C8cycloalkylenes, C3-C10 cycloalkylalkylenes, , or - R3 is C2-C12 alkylene, Date Recue/Date Received 2020-10-20 - R2 and R4 are independently chosen from the side chains of L- and D - amino acids so that the carbon to which R2 or R4 is attached has L or D chirality.
Date Recue/Date Received 2020-10-20
Date Recue/Date Received 2020-10-20
contacting the disinfected product described above with the predetermined Date Recue/Date Received 2020-10-20 bacteria in the target environment and producing lysis of the predetermined bacteria with the bioactive bacteriophages.
BRIEF DESCRIPTION OF THE DRAWINGS
and
Date Recue/Date Received 2020-10-20 DETAILED DESCRIPTION
7.39 MPa) and temperatures (Tc = 31.1 C), amenable to bacteriophages. Moreover, the low reactivity of supercritical (sc) CO2 does not cause significant formation of free radicals and reactive species, which may otherwise alter the structural and mechanical properties of the scaffold and the bacteriophages. Treatment time is short enough to be practical, with studies ranging from 5 min to 100 h.
Specifically, these disclosures pertain to techniques where vegetative bacteria, spore-forming bacteria, fungi, yeast, and viruses are inactivated. For bacteriophage products, it is important to highlight the difference between sterilization and disinfection, the latter term referring to the selective process for the elimination of pathogenic microorganisms, and the former one referring to elimination of all microorganisms and viruses. In the case of bacteriophage products, a disinfection method is needed to inactivate detrimental bacteria, without affecting the viability and release of the bacteriophages from their enclosing matrix. In the case of viruses, their inactivation depends on their structure. The sterilization of bacteriophage-containing products using scCO2 in a matter that inactivates bacteria but preserves the activity of the bacteriophages, without affecting the release properties of the matrix is novel and contrary to what is known. CO2 sterilization is considered a very effective method of completely sterilizing various items, and is considered very useful as it is believed to completely eliminate all microorganisms, including viruses and bacteriophages. Surprisingly, it has been found that it is possible to protect bacteriophages from undue degradation in some products while The present invention aims to fulfill these needs using relatively mild operating pressures and temperatures and moderate processing times, for example, in combination with a protection of the bacteriophages in the product to disinfect.
Essentially free means that there may be some residual contamination in some of the samples that are processed by the proposed method, but that the proposed method satisfies known industry standards relevant to sterilization of devices intended to contact humans and animal invasively, such as during surgery or for use as bandages, among other possibilities.
Indeed, some bacteriophages may still be present in disinfected or sterilized preparations, but in an inactive form, unable to infect bacteria. The proposed method aims at preserving enough bacteriophage activity to act against harmful bacteria when the proposed product is used, for example for the treatment of humans and animals, or in the food processing industry, among other possibilities.
The bacteriophages may be all immediately available when the product is used, or may be in totality or in part released gradually by the product.
However, the proposed product must satisfy sterilization criteria for safety and the proposed method is performed so that these sterilization criteria are satisfied while Date Recue/Date Received 2020-10-20 preserving enough activity in the bioactive bacteriophages. The method includes contacting the product with a disinfection fluid for a disinfection duration under disinfection conditions to produce the disinfected product, the disinfection fluid including supercritical carbon dioxide (scCO2). The bioactive bacteriophages are present in a final quantity in the disinfected product, the final quantity being effective for producing lysis of the predetermined bacteria to reduce bacterial content in the target environment when the disinfected product is used in the target environment.
HO-R1-0H, R1 is chosen from C2-C12 alkylene optionally interrupted by at least one oxygen, C3-C8 cycloalkylene, C3-C10 cycloalkylalkylene, , and , the at least one diacid is a compound of formula:
HO-(C0)-R3-(C0)-0H, R3 is C2-C12 alkylene, the at least one amino acid is chosen from naturally occurring amino acids and non-naturally occurring amino acid.
Date Recue/Date Received 2020-10-20
o o o 0 H H
H
¨ N y R1, vz N R1, ))17E1 N
\
wherein the ratio of I:m ranges from 0.05:0.95 to 0.95:0.05, l+m=1, R1 is chosen from C2-C12alkylenes optionally interrupted by at least one oxygen, Date Recue/Date Received 2020-10-20 , C3-C8 cycloalkylenes, C3-C10 cycloalkylalkylenes, or R3 is C2-C12 alkylene, R2 and R4 are independently chosen from the side chains of L- and D - amino acids so that the carbon to which R2 or R4 is attached has L or D chirality.
This polymer is referred herein as a PEAU.
application PCT/US2016/038527 and US patent application 15/188,783, both filed June 21, 2016.
of scCO2, or any other suitable purity of scCO2. In some embodiments, the disinfection fluid is essentially free of water. In some embodiments, disinfection Date Recue/Date Received 2020-10-20 fluid further comprises a sterilant additive in addition to scCO2. The sterilant additive facilitates disinfection, for example by being suitable for increasing CO2 penetration through bacterial cellular membranes. For example, the sterilant additive has acidic properties, oxidative properties or both acidic and oxidative properties. Non-limiting example of sterilant additivesinclude acetic acid, tert-butyl hydroxy peroxide, paracetic acid, ethanol, formic acid and hydrogen peroxide.
While a small reduction is acceptable, reduction to a very small phage titre is undesirable.
In some embodiments, the method reduces a phage titre of the bioactive bacteriophage by at most a factor of 100 or a factor of 10 so that the final quantity is at least 1 percent or 10 percent of the initial quantity. However, larger reductions may be acceptable in other embodiments, for example at most a factor of 1000.
Date Recue/Date Received 2020-10-20 Example 1: Liquid S. aureus bacteriophages
Treatment 1 consisted of placing the sample in a reactor vessel heated to 35 C
and equilibrated with CO2 at atmospheric pressure. Stirring and agitation mechanisms for the CO2 contained in the vessel were activated (675 RPM) and the vessel was pressurized to 9.9 MPa for 2 hours exposure to scCO2. Following the end of treatment, the stirring was stopped, and the samples were removed from the reactor vessel. A non-treated control of each sample type, contaminated with 106 CFU/mL of bacteria (positive controls) and not contaminated (negative control), were also titrated using standard plaque assay techniques. Sterility of samples were assessed by enumeration of bacterial counts by serial dilution after 14 days incubation of the sample according to USP standards. For treatment 2, treatment 1 was repeated except the exposure time to scCO2 was of 6 hours.
Results show a significant drop (>4 log) of bacteriophage activity, when solutions containing buffer and bacteriophages were sterilized with both treatments.
Group Treatment 1: 2h exposure Treatment 2: 6h exposure Phage titer Sterility Phage titer Sterility (PFU/mL) (PFU/mL) S. aureus phages 6.2 x109 No growth 3.6x109 No growth No bacterial challenge No scCO2 treatment S. aureus phages 1.8x1 06 No growth 1.0x106 No growth No bacterial challenge scCO2 treated Date Recue/Date Received 2020-10-20 S. aureus phages 3.9'109 Growth 2.7x1 09 Growth E. coil bacterial challenge No scCO2 treatment S. aureus phages 2.5x1 06 No growth 3.1 x104 No growth E.coli bacterial challenge scCO2 treated
Example 2: Lyophilized S. aureus bacteriophages
Following the end of treatment, the stirring was stopped, and the samples were removed from the reactor vessel. The lyophilized bacteriophages were reconstituted by adding 500 uL of sterile TMN and were vortexed prior to analysis.
A non-treated control of each sample type, contaminated with 106 CFU/mL of bacteria (positive controls) and not contaminated (negative control), were also titrated using standard plaque assay techniques. Sterility of samples were assessed by enumeration of bacterial counts by serial dilution after 14 days incubation of the sample according to USP standards. For treatment 2, treatment 1 was repeated except the exposure time to scCO2 was of 6 hours.
Date Recue/Date Received 2020-10-20 Group Treatment 1: 2h exposure Treatment 2: 6 hour exposure Phage titer Sterility Phage titer Sterility (PFU/mL) (PFU/mL) S. aureus lyophilized 2.4 x109 No growth 1 x109 No growth phages No bacterial challenge No scCO2 treatment S. aureus lyophilized 1 .7x1 07 No growth 4.3 x107 No growth phages No bacterial challenge scCO2 treated S. aureus lyophilized 1.9*1 09 Growth 9.3 x109 Growth phages E. coil bacterial challenge No scCO2 treatment S. aureus lyophilized 4.1 x109 No growth 1.4 x109 No growth phages E.coli bacterial challenge scCO2 treated Table 2: Effect of scCO2 sterilization on lyophilized S. aureus bacteriophages.
Example 3: S. aureus bacteriophages contained in a thin film biodegradable polymer
Once in the wound, the bacteriophage particle attaches to its host cell through specific recognition of a receptor on the host surface, followed by incorporation of the bacteriophage nucleic acids into the infected cell. The bacteriophage uses the host's cellular components to replicate its genome and assembled bacteriophage particles. The host cell is finally lysed by bacteriophage proteins, releasing the progeny bacteriophages in the environment where they can in turn start the lytic cycle again. 4 cm2of non-contaminated patches and 4 cm2of contaminated with E.
coli at a concentration of 106 CFU/mL in Tyvek pouches, were subjected to two supercritical CO2 conditions. Treatment 1 consisted of placing the Tyvek sample in a reactor vessel heated to 35 C and equilibrated with CO2 at atmospheric pressure. The stirring and agitation mechanisms were activated (675 RPM) and the vessel was pressurized to 9.9 MPa for 2 hours exposure to scCO2. Following the end of treatment, the stirring was stopped, and the samples were removed from the reactor vessel. The patch was removed from the Tyvek pouches and plated on a lawn of S. aureus bacteria to determine the diameter of lysis . A
non-treated control of each sample type, contaminated with 106 CFU/mL of bacteria (positive controls) and not contaminated (negative control), were also placed on the same petri dish and diameter of lysis was determined. Sterility of samples were assessed by enumeration of bacterial counts by serial dilution after 4 days incubation in TSB medium. For treatment 2, treatment 1 was repeated except the exposure time to scCO2 was of 6 hours. Lysis zones for both treatments demonstrate that bacteriophages retained their activity post-treatment.
1. Clean and sterilize a graduated cylinder, funnel, homogenizer, and spatula 2. Set the table in a strictly horizontal position in a chemical hood 3. Put a clean patch casting assembly (a mold) on the horizontal table.
4. Place a rectangular piece of liner in the patch casting assembly.
5. Prepare the following:
48 mL of polymer solution containing 13% PEAU w/v in DCM
24 vials (90-100mg/ea) of freeze-dried phages 0.722g of TMN mix including: 81.4% Tris-HCI; 12.4 % MgSatand 6.2 % NaCI.
6. Put the freeze-dried bacteriophages and TMN solid into a cylindrical glass vessel via a glass funnel using a spatula.
7. Pour the polymer solution in the same vessel.
8. Homogenize at 100 rpm or lower while Moving the cylindrical glass vessel with the content (dry phages + polymer solution) by hand up and down during 30s to homogenize the mixture.
9. Pour the homogenized mixture onto the patch casting assembly. Ensure solution is evenly distributed on the casting surface.
10. Partially cover the assembly with a rectangular metallic cover in a stable environment for 2 days at room temperature to evaporate DCM, under a hood 11. Dry the patch (uncover the assembly) in vacuum oven for 6h at 40 C.
12. Once dry, allow temperature to decrease at room temperature before removing the patch from the cast assembly.
Date Recue/Date Received 2020-10-20 Group Treatment 1: 2h exposure Treatment 2: 6 hour exposure Lysis Sterility Lysis diameter Sterility diameter (mmxmm) (mmxmm) PEAU patch No lysis No growth No lysis No growth No phages No bacterial challenge No scCO2 treatment S. aureus lyophilized No lysis No growth Lysis due to No growth phages cross No phages contamination No bacterial challenge (outlier) scCO2 treated PEAU patch No lysis Growth No lysis Growth No phages E. coil bacterial challenge No scCO2 treatment S. aureus lyophilized No lysis No growth No lysis No growth phages No phages E. coil bacterial challenge scCO2 treated S. aureus lyophilized 9x9 No growth 1 Ox1 1 No growth phages S. aureus phages No bacterial challenge No scCO2 treatment S. aureus lyophilized 13x11 No growth 8x7 No growth phages S. aureus phages No bacterial challenge Date Recue/Date Received 2020-10-20 scCO2 treated S. aureus lyophilized 8x1 0 Growth 9x1 0 Growth phages S. aureus phages E. coil bacterial challenge No scCO2 treatment S. aureus lyophilized 1 0x6 No growth 7x8 No growth phages S. aureus phages E.coli bacterial challenge scCO2 treated Table 3 : Effect of scCO2 sterilization on S. aureus bacteriophages contained in biodegradable polymer thin film.
Example 4: Effect on release of Bacteriophages cocktail contained in a thin film biodegradable polymer
Cocktail was diluted 1/10 in sucrose 0,1M and lyophilized (the lyophilizer temperature was set at -40 C before putting the vials, then vacuum pump was turned ON for 3 hours. Temperature was increased to 0 C at a rate of 1 C/min.
Temperature was kept stable for 18hours before increasing it to 25 C at rate of 0,07 C/min. Temperature was kept stable for 6h before decreasing it to 4 C at a rate of 1 C/min. Caps were closed using the stoppering bag before removing the vials from lyosphilizer). 24 vials of lyophilized cocktail were mixed with 44mL of 13% PEAU in dichloromethane and 0,72g of TMN powder using high speed homogenizer. Patches were poured in 432cm2 Teflon tray where 3M liner (ScotchPak (TM) 9741 3,5mm) was placed. DCM was allowed to evaporate under chemical hood overnight. Patch is then dried in vacuum oven at 40 C for 6h.
Date Recue/Date Received 2021-01-07 Another sheet of the liner was placed on the dry patch. Patch was then cut to 2cm*2cm pieces. Each piece was placed in a Tyvek pouch with a header (A3333/I73-50). Tyvek pouches were closed with a tape and labelled properly. 4 cm2 of patches in Tyvek pouches were subjected to four supercritical CO2 conditions according to the following table. Bacteriophage release, stability and sterility were performed according to internal standard operating procedures.
Briefly, each piece of patch is cut to five pieces: 3 pieces for release (dependent triplicate) + 2 pieces for sterility testing in Tryptic Soy Agar (TSB) and Fluid Thioglycollate Medium (FTM). Each piece of the patch was to be used for release was weighed and normalize to 20-25mg. Each piece was placed in 1,5mL tubes containing 1mL of EMEM+10%FBS. At timepoints 0, 0.5, 1, 2, 3, 4, 5, 24hours the patch pieces was moved, using sterile forceps to a new 1,5mL tubes containing 1mL of EMEM+10%FBS. The released bacteriophages were tittered according to the following procedure: 100 L of bacterial daily culture are added to 2,5mL
of TSB top agar (30g/L TSB + 0,7% agar). The mixture is poured on a TSA plate (30g/L TSB +15% agar) immediately after brief vortex. 10 L of each dilution are dispensed on the bacterial layer. Plates are incubated inverted at 37 C for 18 hours. The plaques are counted in selected dilution (with 10-100 plaques) and the bacteriophage titer is calculated according to the following equation:
bacteriophage titer = number of plaques *100/dilution factor. The cumulative release is calculated using the following equation: cumulative release = Sum of bacteriophage released for 24hours / weight of patch piece.
for 14 days and in 3mL of FTM and incubate at 26 C for 14 days. The samples were inspected daily for the presence of any contamination. The patch is sterile if Date Recue/Date Received 2020-10-20 no growth is observed in TSB and FTM after 14 days All patches remained sterile for all groups. Figure 1 shows that the bacteriophages released was not affected for all treatments when stored at 4 C. Figure 2 shows preliminary results obtained for K. pneumoniae for Treatments 2, 3, and 4 showing accelerated stability at Treatment 1 Treatment 2 Treatment 3 Treatment 4 Run time 30 minutes 60 minutes 90 minutes 120 minutes Pressurization/Depress 09:50/17:28 13:35/18:05 08:59/18:05 06:54/29:57 urization times Target temperature 35 C 35 C 35 C 35 C
Target pressure 1,436 psi 1,436 psi 1,436 psi 1,436 psi Stirrer speed 675 rpm 675 rpm 675 rpm 675 rpm Table 4 : scCO2 sterilization programs according to different exposure times Example 5: Bacteriophages contained in polymeric microcapsules
PEAU (formulation #008) in DCM (8mL) using high speed homogenizer for 15s.
The mixture was added drop-wise in cocktail + 2 /0PVA (20mL) while stirring DCM
was allowed to evaporate overnight while stirring and beaker being capped with a glass watch. Final volume was 22-23mL of Formulation 9. To prepare the Formulation 10, Formulation 9 was complemented with 3 /0PVA. Formulation 10 was stirred overnight at room temperature to ensure PVA is completely dissolved.
Similarly, Formulation 11 was prepared by complementing Formulation 9 with 0,25g/mL of Poloxamer P407. Formulation was stirred overnight at 4 C to ensure P407 is completely dissolved Microcapsule solutions were dispensed in stoppered glass vials. Glass vials were uncapped and packaged in TyvekTm pouches (4-5 samples/pouch), heat sealed between vials to isolate samples prior to their introduction into the reactor vessel and exposed to treatments 1 to 4 as previously described. Following treatment, the formulations are diluted 1/10 in TSB. 100 L of bacterial daily culture are added to 2,5mL of TSB top agar (30g/L TSB + 0,7%
agar). The mixture is poured on a TSA plate (30g/L TSB +15% agar) immediately after brief vortex. 10 L of each dilution are dispensed on the bacterial layer. Plates are incubated inverted at 37 C for 18 hours. The plaques are counted in selected dilution (with 10-100 plaques) and the bacteriophage titer is calculated according to the following equation: bacteriophage titer = number of plaques *100/dilution factor. Figure 3, 4, and 5 demonstrate that the bacteriophage activity was maintained for all three formulations for 112 days when stored at 26 C for accelerated stability.
Date Recue/Date Received 2021-01-07 Treatment 1 Run time 30 minutes Pressurization/Depressuri 09:50/17:28 zation times Target temperature 35 C
Target pressure 1,436 psi Stirrer speed 675 rpm Table 5 : scCO2 sterilization program.
Example 6: Maintenance of release kinetics after long term storage of bacteriophages containing patches.
Accordingly, the scope of the claims should not be limited by the exemplary embodiments, but should be given the broadest interpretation consistent with the description as a whole.
Date Recue/Date Received 2021-01-07
Claims (52)
- providing an initial product in which the bioactive bacteriophages are present in an initial quantity; and - contacting the initial product with a disinfection fluid for a disinfection duration under disinfection conditions to produce the disinfected product from the initial product, the disinfection fluid including supercritical carbon dioxide (scCO2) ;
- wherein the bioactive bacteriophages are present in a final quantity in the disinfected product, the final quantity being effective for producing lysis of the predetermined bacteria to reduce bacterial content in the target environment when the disinfected product is used in the target environment.
Date Recue/Date Received 2021-01-07
Date Recue/Date Received 2021-01-07
HO-R1-0H, R1 is chosen from C2-C12alkylene optionally interrupted by at least one oxygen, C3-C8cycloalkylene, C3-C10 cycloalkylalkylene, , and Date Recue/Date Received 2021-01-07 - the at least one diacid is a compound of formula:
HO-(C0)-R3-(C0)-0H, R3 is C2-C12 alkylene, - the at least one amino acid is chosen from naturally occurring amino acids and non-naturally occurring amino acid.
(NyLRl).yN
0 0 1rH
R R3 NyL0- 1,0)y wherein - the ratio of 1:m ranges from 0.05:0.95 to 0.95:0.05, 1+m=1, - R1 is chosen from C2-C12 alkylenes optionally interrupted by at least one oxygen, C3-C8 cycloalkylenes, C3-Clo cycloalkylalkylenesõ or - R3 iS C2-C12 alkylene, - R2 and R4 are independently chosen from the side chains of L- and D -amino acids so that the carbon to which R2 or Rt is attached has L or D chirality.
Date Recue/Date Received 2021-01-07
Date Recue/Date Received 2021-01-07
Date Recue/Date Received 2021-01-07
- providing an initial product in which the bioactive bacteriophages are present in an initial quantity; and - contacting the initial product with a disinfection fluid for a disinfection duration under disinfection conditions to produce the disinfected product from the initial product, the disinfection fluid including CO2 at a pressure of at least about 7 MPa and a temperature of at least about 30 C;
- wherein the bioactive bacteriophages are present in a final quantity in the disinfected product, the final quantity being effective for producing lysis of the predetermined bacteria to reduce bacterial content in the target environment when the disinfected product is used in the target environment.
Date Recue/Date Received 2021-01-07
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| US201962864204P | 2019-06-20 | 2019-06-20 | |
| US62/864,204 | 2019-06-20 | ||
| PCT/IB2020/055749 WO2020255041A1 (en) | 2019-06-20 | 2020-06-18 | Disinfection of bacteriophages products using supercritical carbon dioxide |
Publications (2)
| Publication Number | Publication Date |
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| FR2735372B1 (en) * | 1995-06-13 | 1997-09-05 | Bioland | NEW USES OF A SUPERCRITICAL CARBON DIOXIDE CURRENT AS ANTIVIRAL AGENT |
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| US7560113B2 (en) * | 2003-06-23 | 2009-07-14 | Nova Sterilis, Inc. | Inactivating organisms using carbon dioxide at or near its supercritical pressure and temperature conditions |
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| US20110085968A1 (en) * | 2009-10-13 | 2011-04-14 | The Regents Of The University Of California | Articles comprising nano-materials for geometry-guided stem cell differentiation and enhanced bone growth |
| US8956566B2 (en) * | 2012-03-12 | 2015-02-17 | Pure Biosolutions, Llc | System and method for virus inactivation |
| US20140248328A1 (en) * | 2012-08-31 | 2014-09-04 | Jennifer L. Wehmeyer | Methods of treating amniotic membranes using supercritical fluids and compositions and apparatuses prepared therefrom |
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| WO2016207725A1 (en) * | 2015-06-23 | 2016-12-29 | Phagelux (Canada), Inc. | Composition comprising amino acid polymers and a bioactive agent and method of preparing thereof |
| RU2616257C9 (en) * | 2015-11-05 | 2017-07-24 | Общество с ограниченной ответственностью "Фармактивы Капитал" | Biological method of selective disinfection using bacteriophages |
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| EP3474898A4 (en) * | 2016-06-23 | 2020-04-15 | Phagelux (Canada) Inc. | MICRO-ENCAPSULATION OF BACTERIOPHAGES AND RELATED PRODUCTS |
| US20210112816A1 (en) | 2017-04-26 | 2021-04-22 | Phagelux (Canada) Inc. | Plasma immobilization of bacteriophages and applications thereof |
| WO2018222856A2 (en) * | 2017-06-02 | 2018-12-06 | Emd Millipore Corporation | Photonic inactivation of pathogens |
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| CA3096783A1 (en) | 2020-12-20 |
| CN113164636A (en) | 2021-07-23 |
| CN113164636B (en) | 2024-11-22 |
| WO2020255041A1 (en) | 2020-12-24 |
| US20230113410A1 (en) | 2023-04-13 |
| US12232492B2 (en) | 2025-02-25 |
| EP3986485A1 (en) | 2022-04-27 |
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