CA2589232A1 - Method and apparatus for the simultaneous separation of biological molecules by two dimensional electrophoresis - Google Patents
Method and apparatus for the simultaneous separation of biological molecules by two dimensional electrophoresis Download PDFInfo
- Publication number
- CA2589232A1 CA2589232A1 CA002589232A CA2589232A CA2589232A1 CA 2589232 A1 CA2589232 A1 CA 2589232A1 CA 002589232 A CA002589232 A CA 002589232A CA 2589232 A CA2589232 A CA 2589232A CA 2589232 A1 CA2589232 A1 CA 2589232A1
- Authority
- CA
- Canada
- Prior art keywords
- matrix
- biomolecules
- dimensional electrophoresis
- electrode
- electrical field
- Prior art date
- Legal status (The legal status is an assumption and is not a legal conclusion. Google has not performed a legal analysis and makes no representation as to the accuracy of the status listed.)
- Abandoned
Links
- 238000000034 method Methods 0.000 title claims abstract description 58
- 238000000926 separation method Methods 0.000 title claims abstract description 52
- 238000000539 two dimensional gel electrophoresis Methods 0.000 title claims description 24
- 239000011159 matrix material Substances 0.000 claims abstract description 88
- 238000001962 electrophoresis Methods 0.000 claims abstract description 30
- 239000000126 substance Substances 0.000 claims abstract description 19
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- 239000012472 biological sample Substances 0.000 claims description 39
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- XSQUKJJJFZCRTK-UHFFFAOYSA-N Urea Chemical compound NC(N)=O XSQUKJJJFZCRTK-UHFFFAOYSA-N 0.000 claims description 10
- 229920002401 polyacrylamide Polymers 0.000 claims description 9
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- HRPVXLWXLXDGHG-UHFFFAOYSA-N Acrylamide Chemical compound NC(=O)C=C HRPVXLWXLXDGHG-UHFFFAOYSA-N 0.000 claims description 5
- -1 N-substituted acrylamide Chemical class 0.000 claims description 5
- 238000012512 characterization method Methods 0.000 claims description 5
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- 239000004033 plastic Substances 0.000 claims description 3
- KGIGUEBEKRSTEW-UHFFFAOYSA-N 2-vinylpyridine Chemical compound C=CC1=CC=CC=N1 KGIGUEBEKRSTEW-UHFFFAOYSA-N 0.000 claims description 2
- QTBSBXVTEAMEQO-UHFFFAOYSA-M Acetate Chemical compound CC([O-])=O QTBSBXVTEAMEQO-UHFFFAOYSA-M 0.000 claims description 2
- 229920002307 Dextran Polymers 0.000 claims description 2
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- VHJLVAABSRFDPM-QWWZWVQMSA-N dithiothreitol Chemical compound SC[C@@H](O)[C@H](O)CS VHJLVAABSRFDPM-QWWZWVQMSA-N 0.000 claims description 2
- 239000011152 fibreglass Substances 0.000 claims description 2
- 238000010438 heat treatment Methods 0.000 claims description 2
- 238000011065 in-situ storage Methods 0.000 claims description 2
- PGLTVOMIXTUURA-UHFFFAOYSA-N iodoacetamide Chemical compound NC(=O)CI PGLTVOMIXTUURA-UHFFFAOYSA-N 0.000 claims description 2
- ZIUHHBKFKCYYJD-UHFFFAOYSA-N n,n'-methylenebisacrylamide Chemical compound C=CC(=O)NCNC(=O)C=C ZIUHHBKFKCYYJD-UHFFFAOYSA-N 0.000 claims description 2
- 229920001778 nylon Polymers 0.000 claims description 2
- 239000003960 organic solvent Substances 0.000 claims description 2
- 238000006116 polymerization reaction Methods 0.000 claims description 2
- 239000004094 surface-active agent Substances 0.000 claims description 2
- TUQOTMZNTHZOKS-UHFFFAOYSA-N tributylphosphine Chemical compound CCCCP(CCCC)CCCC TUQOTMZNTHZOKS-UHFFFAOYSA-N 0.000 claims description 2
- DGVVWUTYPXICAM-UHFFFAOYSA-N β‐Mercaptoethanol Chemical compound OCCS DGVVWUTYPXICAM-UHFFFAOYSA-N 0.000 claims description 2
- 238000003556 assay Methods 0.000 claims 1
- 102000004169 proteins and genes Human genes 0.000 abstract description 38
- 108090000623 proteins and genes Proteins 0.000 abstract description 38
- 108090000765 processed proteins & peptides Proteins 0.000 abstract description 32
- 102000004196 processed proteins & peptides Human genes 0.000 abstract description 23
- 229920001184 polypeptide Polymers 0.000 abstract description 15
- 235000018102 proteins Nutrition 0.000 description 37
- 210000004027 cell Anatomy 0.000 description 13
- 239000000463 material Substances 0.000 description 8
- 238000009792 diffusion process Methods 0.000 description 6
- 210000002950 fibroblast Anatomy 0.000 description 6
- UDSAIICHUKSCKT-UHFFFAOYSA-N bromophenol blue Chemical compound C1=C(Br)C(O)=C(Br)C=C1C1(C=2C=C(Br)C(O)=C(Br)C=2)C2=CC=CC=C2S(=O)(=O)O1 UDSAIICHUKSCKT-UHFFFAOYSA-N 0.000 description 4
- 238000002415 sodium dodecyl sulfate polyacrylamide gel electrophoresis Methods 0.000 description 4
- QTBSBXVTEAMEQO-UHFFFAOYSA-N Acetic acid Chemical compound CC(O)=O QTBSBXVTEAMEQO-UHFFFAOYSA-N 0.000 description 3
- PEDCQBHIVMGVHV-UHFFFAOYSA-N Glycerine Chemical compound OCC(O)CO PEDCQBHIVMGVHV-UHFFFAOYSA-N 0.000 description 3
- OKKJLVBELUTLKV-UHFFFAOYSA-N Methanol Chemical compound OC OKKJLVBELUTLKV-UHFFFAOYSA-N 0.000 description 3
- DBMJMQXJHONAFJ-UHFFFAOYSA-M Sodium laurylsulphate Chemical compound [Na+].CCCCCCCCCCCCOS([O-])(=O)=O DBMJMQXJHONAFJ-UHFFFAOYSA-M 0.000 description 3
- 239000007788 liquid Substances 0.000 description 3
- 238000004949 mass spectrometry Methods 0.000 description 3
- 230000009471 action Effects 0.000 description 2
- ROOXNKNUYICQNP-UHFFFAOYSA-N ammonium persulfate Chemical compound [NH4+].[NH4+].[O-]S(=O)(=O)OOS([O-])(=O)=O ROOXNKNUYICQNP-UHFFFAOYSA-N 0.000 description 2
- 230000005540 biological transmission Effects 0.000 description 2
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- 238000002474 experimental method Methods 0.000 description 2
- 238000013508 migration Methods 0.000 description 2
- 230000005012 migration Effects 0.000 description 2
- 238000012986 modification Methods 0.000 description 2
- 230000004048 modification Effects 0.000 description 2
- BASFCYQUMIYNBI-UHFFFAOYSA-N platinum Chemical compound [Pt] BASFCYQUMIYNBI-UHFFFAOYSA-N 0.000 description 2
- 238000002264 polyacrylamide gel electrophoresis Methods 0.000 description 2
- 239000000700 radioactive tracer Substances 0.000 description 2
- 238000012360 testing method Methods 0.000 description 2
- QFVHZQCOUORWEI-UHFFFAOYSA-N 4-[(4-anilino-5-sulfonaphthalen-1-yl)diazenyl]-5-hydroxynaphthalene-2,7-disulfonic acid Chemical compound C=12C(O)=CC(S(O)(=O)=O)=CC2=CC(S(O)(=O)=O)=CC=1N=NC(C1=CC=CC(=C11)S(O)(=O)=O)=CC=C1NC1=CC=CC=C1 QFVHZQCOUORWEI-UHFFFAOYSA-N 0.000 description 1
- 229920002319 Poly(methyl acrylate) Polymers 0.000 description 1
- 239000004698 Polyethylene Substances 0.000 description 1
- 239000004743 Polypropylene Substances 0.000 description 1
- RTAQQCXQSZGOHL-UHFFFAOYSA-N Titanium Chemical compound [Ti] RTAQQCXQSZGOHL-UHFFFAOYSA-N 0.000 description 1
- 239000002168 alkylating agent Substances 0.000 description 1
- 229940100198 alkylating agent Drugs 0.000 description 1
- 229910001870 ammonium persulfate Inorganic materials 0.000 description 1
- 238000004458 analytical method Methods 0.000 description 1
- 239000007864 aqueous solution Substances 0.000 description 1
- 239000000038 blue colorant Substances 0.000 description 1
- 238000005251 capillar electrophoresis Methods 0.000 description 1
- 238000003508 chemical denaturation Methods 0.000 description 1
- 238000006243 chemical reaction Methods 0.000 description 1
- 238000004587 chromatography analysis Methods 0.000 description 1
- 239000003398 denaturant Substances 0.000 description 1
- 238000011161 development Methods 0.000 description 1
- 238000010586 diagram Methods 0.000 description 1
- 239000012153 distilled water Substances 0.000 description 1
- 239000003814 drug Substances 0.000 description 1
- 230000000694 effects Effects 0.000 description 1
- 229920001971 elastomer Polymers 0.000 description 1
- 239000000806 elastomer Substances 0.000 description 1
- 238000011067 equilibration Methods 0.000 description 1
- 238000000605 extraction Methods 0.000 description 1
- 238000001641 gel filtration chromatography Methods 0.000 description 1
- 239000011521 glass Substances 0.000 description 1
- 238000003780 insertion Methods 0.000 description 1
- 230000037431 insertion Effects 0.000 description 1
- 230000010354 integration Effects 0.000 description 1
- 238000005342 ion exchange Methods 0.000 description 1
- 238000004519 manufacturing process Methods 0.000 description 1
- 230000007170 pathology Effects 0.000 description 1
- 229910052697 platinum Inorganic materials 0.000 description 1
- 239000004417 polycarbonate Substances 0.000 description 1
- 229920000515 polycarbonate Polymers 0.000 description 1
- 229920000573 polyethylene Polymers 0.000 description 1
- 229920001155 polypropylene Polymers 0.000 description 1
- 238000002360 preparation method Methods 0.000 description 1
- 235000004252 protein component Nutrition 0.000 description 1
- 238000000746 purification Methods 0.000 description 1
- 239000003507 refrigerant Substances 0.000 description 1
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- 238000005070 sampling Methods 0.000 description 1
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- 239000000243 solution Substances 0.000 description 1
- 238000010186 staining Methods 0.000 description 1
- 229940124597 therapeutic agent Drugs 0.000 description 1
- 229910052719 titanium Inorganic materials 0.000 description 1
- 239000010936 titanium Substances 0.000 description 1
- XLYOFNOQVPJJNP-UHFFFAOYSA-N water Chemical compound O XLYOFNOQVPJJNP-UHFFFAOYSA-N 0.000 description 1
Classifications
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
-
- G—PHYSICS
- G01—MEASURING; TESTING
- G01N—INVESTIGATING OR ANALYSING MATERIALS BY DETERMINING THEIR CHEMICAL OR PHYSICAL PROPERTIES
- G01N27/00—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means
- G01N27/26—Investigating or analysing materials by the use of electric, electrochemical, or magnetic means by investigating electrochemical variables; by using electrolysis or electrophoresis
- G01N27/416—Systems
- G01N27/447—Systems using electrophoresis
- G01N27/44756—Apparatus specially adapted therefor
- G01N27/44773—Multi-stage electrophoresis, e.g. two-dimensional electrophoresis
Landscapes
- Health & Medical Sciences (AREA)
- Life Sciences & Earth Sciences (AREA)
- Molecular Biology (AREA)
- Chemical & Material Sciences (AREA)
- Chemical Kinetics & Catalysis (AREA)
- Electrochemistry (AREA)
- Physics & Mathematics (AREA)
- Analytical Chemistry (AREA)
- Biochemistry (AREA)
- General Health & Medical Sciences (AREA)
- General Physics & Mathematics (AREA)
- Immunology (AREA)
- Pathology (AREA)
- Peptides Or Proteins (AREA)
- Investigating Or Analysing Biological Materials (AREA)
Applications Claiming Priority (3)
| Application Number | Priority Date | Filing Date | Title |
|---|---|---|---|
| IT000301A ITPD20040301A1 (it) | 2004-11-26 | 2004-11-26 | Metodo ed apparato per la separazione simultanea di molecole biologiche mediante elettroforesi bidimensionale |
| ITPD2004A000301 | 2004-11-26 | ||
| PCT/IB2005/003519 WO2006056861A1 (en) | 2004-11-26 | 2005-11-24 | Method and apparatus for the simultaneous separation of biological molecules by two dimensional electrophoresis |
Publications (1)
| Publication Number | Publication Date |
|---|---|
| CA2589232A1 true CA2589232A1 (en) | 2006-06-01 |
Family
ID=36124054
Family Applications (1)
| Application Number | Title | Priority Date | Filing Date |
|---|---|---|---|
| CA002589232A Abandoned CA2589232A1 (en) | 2004-11-26 | 2005-11-24 | Method and apparatus for the simultaneous separation of biological molecules by two dimensional electrophoresis |
Country Status (8)
| Country | Link |
|---|---|
| US (1) | US20080202934A1 (https=) |
| EP (1) | EP1828760A1 (https=) |
| JP (1) | JP5006790B2 (https=) |
| KR (1) | KR20070089918A (https=) |
| CN (1) | CN101111762B (https=) |
| CA (1) | CA2589232A1 (https=) |
| IT (1) | ITPD20040301A1 (https=) |
| WO (1) | WO2006056861A1 (https=) |
Families Citing this family (26)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US20190300945A1 (en) | 2010-04-05 | 2019-10-03 | Prognosys Biosciences, Inc. | Spatially Encoded Biological Assays |
| US10787701B2 (en) | 2010-04-05 | 2020-09-29 | Prognosys Biosciences, Inc. | Spatially encoded biological assays |
| GB201106254D0 (en) | 2011-04-13 | 2011-05-25 | Frisen Jonas | Method and product |
| WO2014060483A1 (en) | 2012-10-17 | 2014-04-24 | Spatial Transcriptomics Ab | Methods and product for optimising localised or spatial detection of gene expression in a tissue sample |
| EP3013983B1 (en) | 2013-06-25 | 2023-02-15 | Prognosys Biosciences, Inc. | Spatially encoded biological assays using a microfluidic device |
| US10774374B2 (en) | 2015-04-10 | 2020-09-15 | Spatial Transcriptomics AB and Illumina, Inc. | Spatially distinguished, multiplex nucleic acid analysis of biological specimens |
| CN105498540A (zh) * | 2015-12-08 | 2016-04-20 | 北京大学第一医院 | 一种具有浓缩功能的电泳仪 |
| US12529094B2 (en) | 2018-12-10 | 2026-01-20 | 10X Genomics, Inc. | Imaging system hardware |
| EP3894590B1 (en) | 2018-12-10 | 2025-10-22 | 10X Genomics, Inc. | Methods of using master / copy arrays for spatial detection |
| US12157124B2 (en) | 2019-11-06 | 2024-12-03 | 10X Genomics, Inc. | Imaging system hardware |
| US12405264B2 (en) | 2020-01-17 | 2025-09-02 | 10X Genomics, Inc. | Electrophoretic system and method for analyte capture |
| US11768175B1 (en) | 2020-03-04 | 2023-09-26 | 10X Genomics, Inc. | Electrophoretic methods for spatial analysis |
| CN111560063B (zh) * | 2020-05-12 | 2022-11-01 | 蚌埠医学院 | 一种动物胰脏来源胰岛素原料药纯化装置及使用方法 |
| CN116134308B (zh) | 2020-05-19 | 2025-05-27 | 10X基因组学有限公司 | 电泳盒和仪器 |
| EP4153775B1 (en) | 2020-05-22 | 2024-07-24 | 10X Genomics, Inc. | Simultaneous spatio-temporal measurement of gene expression and cellular activity |
| US12031177B1 (en) | 2020-06-04 | 2024-07-09 | 10X Genomics, Inc. | Methods of enhancing spatial resolution of transcripts |
| WO2021252499A1 (en) | 2020-06-08 | 2021-12-16 | 10X Genomics, Inc. | Methods of determining a surgical margin and methods of use thereof |
| WO2021252747A1 (en) | 2020-06-10 | 2021-12-16 | 1Ox Genomics, Inc. | Fluid delivery methods |
| EP4491742B1 (en) | 2020-09-18 | 2026-03-04 | 10X Genomics, Inc. | Sample handling apparatus and image registration methods |
| EP4729631A2 (en) | 2020-12-21 | 2026-04-22 | 10X Genomics, Inc. | Methods, compositions, and systems for capturing probes and/or barcodes |
| WO2022178267A2 (en) | 2021-02-19 | 2022-08-25 | 10X Genomics, Inc. | Modular assay support devices |
| EP4582555A3 (en) | 2021-06-03 | 2025-10-22 | 10X Genomics, Inc. | Methods, compositions, kits, and systems for enhancing analyte capture for spatial analysis |
| US12553805B2 (en) | 2021-08-02 | 2026-02-17 | 10X Genomics, Inc. | Methods of preserving a biological sample |
| USD1064308S1 (en) | 2021-09-17 | 2025-02-25 | 10X Genomics, Inc. | Sample handling device |
| EP4305195A2 (en) | 2021-12-01 | 2024-01-17 | 10X Genomics, Inc. | Methods, compositions, and systems for improved in situ detection of analytes and spatial analysis |
| EP4441711A1 (en) | 2021-12-20 | 2024-10-09 | 10X Genomics, Inc. | Self-test for pathology/histology slide imaging device |
Family Cites Families (13)
| Publication number | Priority date | Publication date | Assignee | Title |
|---|---|---|---|---|
| US3844925A (en) * | 1973-07-02 | 1974-10-29 | Center For Blood Res | Molecular fractionation |
| EP0497077B1 (de) * | 1991-01-28 | 1996-07-17 | Ciba-Geigy Ag | Vorrichtung zur Vorbereitung von Proben insbesondere für Analysezwecke |
| US6071394A (en) * | 1996-09-06 | 2000-06-06 | Nanogen, Inc. | Channel-less separation of bioparticles on a bioelectronic chip by dielectrophoresis |
| US6207031B1 (en) * | 1997-09-15 | 2001-03-27 | Whitehead Institute For Biomedical Research | Methods and apparatus for processing a sample of biomolecular analyte using a microfabricated device |
| IT1309430B1 (it) * | 1999-05-18 | 2002-01-23 | Guerrieri Roberto | Metodo ed apparato per la manipolazione di particelle per mezzo delladielettroforesi |
| ATE359502T1 (de) * | 1999-07-16 | 2007-05-15 | Applera Corp | Vorrichtung und verfahren für hochdichte elektrophorese |
| US6328870B1 (en) * | 2000-01-27 | 2001-12-11 | Cbm Intellectural Properties, Inc. | Electrophoresis gel running plate |
| GB0010957D0 (en) * | 2000-05-05 | 2000-06-28 | Novartis Ag | Compound & method |
| EP1211510A1 (en) * | 2000-11-29 | 2002-06-05 | Proteologics, Inc. | Methods and apparatus for nonlinear mobility electrophoresis separation |
| AUPR222300A0 (en) * | 2000-12-21 | 2001-01-25 | Life Therapeutics Limited | Electrophoresis device and method |
| EP1379864A1 (en) * | 2001-04-17 | 2004-01-14 | Nextgen Sciences Ltd | Electrophoretic separation system |
| GB0130235D0 (en) * | 2001-12-18 | 2002-02-06 | Deltadot Ltd | Centrifugal spectrometer |
| JP3672910B2 (ja) * | 2002-07-12 | 2005-07-20 | 太陽誘電株式会社 | マイクロキャピラリーを有するディスク状光記録媒体、及び該ディスク状光記録媒体を用いた試料分析装置 |
-
2004
- 2004-11-26 IT IT000301A patent/ITPD20040301A1/it unknown
-
2005
- 2005-11-24 EP EP05850670A patent/EP1828760A1/en not_active Withdrawn
- 2005-11-24 CN CN2005800405505A patent/CN101111762B/zh not_active Expired - Fee Related
- 2005-11-24 US US11/791,728 patent/US20080202934A1/en not_active Abandoned
- 2005-11-24 JP JP2007542164A patent/JP5006790B2/ja not_active Expired - Fee Related
- 2005-11-24 KR KR1020077011797A patent/KR20070089918A/ko not_active Abandoned
- 2005-11-24 CA CA002589232A patent/CA2589232A1/en not_active Abandoned
- 2005-11-24 WO PCT/IB2005/003519 patent/WO2006056861A1/en not_active Ceased
Also Published As
| Publication number | Publication date |
|---|---|
| EP1828760A1 (en) | 2007-09-05 |
| US20080202934A1 (en) | 2008-08-28 |
| CN101111762A (zh) | 2008-01-23 |
| WO2006056861A1 (en) | 2006-06-01 |
| CN101111762B (zh) | 2011-01-12 |
| KR20070089918A (ko) | 2007-09-04 |
| JP5006790B2 (ja) | 2012-08-22 |
| ITPD20040301A1 (it) | 2005-02-26 |
| JP2008522144A (ja) | 2008-06-26 |
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Legal Events
| Date | Code | Title | Description |
|---|---|---|---|
| EEER | Examination request | ||
| FZDE | Discontinued |
Effective date: 20131126 |